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SNORD154 small nucleolar RNA, C/D box 154 [ Homo sapiens (human) ]

Gene ID: 109623474, updated on 10-Oct-2023

Summary

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Official Symbol
SNORD154provided by HGNC
Official Full Name
small nucleolar RNA, C/D box 154provided by HGNC
Primary source
HGNC:HGNC:51868
See related
AllianceGenome:HGNC:51868
Gene type
snoRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SNORD154 in Genome Data Viewer
Location:
20q12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (40714572..40714623, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (42446058..42446109, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (39343212..39343263, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372620 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17880 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12909 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12910 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:39318089-39319066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:39319067-39320042 Neighboring gene uncharacterized LOC101927098 Neighboring gene VISTA enhancer hs1086 Neighboring gene MAF bZIP transcription factor B Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:39391384-39391884 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:39398981-39399542 Neighboring gene RNA, 5S ribosomal pseudogene 484 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:39502077-39502280 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12911 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:39526059-39526232 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:39589576-39590207 Neighboring gene uncharacterized LOC100128988 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17881 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17882 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17883 Neighboring gene uncharacterized LOC105372621 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:39625651-39626225 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:39631901-39633100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An updated human snoRNAome. Jorjani H, et al. Nucleic Acids Res, 2016 Jun 20. PMID 27174936, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_145814.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AL035665

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    40714572..40714623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    42446058..42446109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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