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jph3b junctophilin 3b [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109645169, updated on 30-Oct-2024

Summary

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Gene symbol
jph3b
Gene description
junctophilin 3b
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Also known as
jph3
Orthologs
human zebrafish all
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Genomic context

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See jph3b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_10 current ASM2471397v2 (GCF_024713975.1) 7 NC_091099.1 (2837164..2866690)
100 previous assembly Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017861731.1 (1154..12747, complement)

Chromosome 7 - NC_091099.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 7 member 5 Neighboring gene kelch domain containing 4 Neighboring gene zinc finger, CCHC domain containing 14 Neighboring gene microtubule-associated protein 1 light chain 3 beta Neighboring gene DET1 partner of COP1 E3 ubiquitin ligase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of synaptic plasticity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of junctional membrane complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
junctophilin-3
Names
junctophilin 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024713975.1-RS_2024_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2471397v2 Primary Assembly

Genomic

  1. NC_091099.1 Reference ASM2471397v2 Primary Assembly

    Range
    2837164..2866690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_069528785.1 → XP_069384886.1  junctophilin-3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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