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Cyb5a cytochrome b5 type A (microsomal) [ Mus musculus (house mouse) ]

Gene ID: 109672, updated on 28-Oct-2024

Summary

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Official Symbol
Cyb5aprovided by MGI
Official Full Name
cytochrome b5 type A (microsomal)provided by MGI
Primary source
MGI:MGI:1926952
See related
Ensembl:ENSMUSG00000024646 AllianceGenome:MGI:1926952
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cyb5; 0610009N12Rik
Summary
Predicted to enable enzyme binding activity and heme binding activity. Predicted to act upstream of or within fatty acid metabolic process. Located in endoplasmic reticulum. Is expressed in early conceptus. Human ortholog(s) of this gene implicated in methemoglobinemia and methemoglobinemia and ambiguous genitalia. Orthologous to human CYB5A (cytochrome b5 type A). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Broad expression in liver adult (RPKM 359.3), liver E18 (RPKM 268.1) and 25 other tissues See more
Orthologs
human all
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Genomic context

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See Cyb5a in Genome Data Viewer
Location:
18 E4; 18 57.53 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (84869463..84897996)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (84851338..84879871)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene divergent protein kinase domain 1C Neighboring gene predicted gene, 38576 Neighboring gene STARR-seq mESC enhancer starr_45257 Neighboring gene STARR-positive B cell enhancer ABC_E8728 Neighboring gene predicted gene, 17266 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:85043680-85043998 Neighboring gene STARR-seq mESC enhancer starr_45258 Neighboring gene predicted gene 16146 Neighboring gene STARR-positive B cell enhancer ABC_E11009 Neighboring gene STARR-seq mESC enhancer starr_45265 Neighboring gene STARR-seq mESC enhancer starr_45275 Neighboring gene F-box protein 15 Neighboring gene translocase of inner mitochondrial membrane 21 Neighboring gene STARR-seq mESC enhancer starr_45276 Neighboring gene STARR-seq mESC enhancer starr_45277 Neighboring gene STARR-seq mESC enhancer starr_45279 Neighboring gene predicted gene, 32291

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. In vitro membrane-inserted conformation of the cytochrome b(5) tail. Hanlon MR, et al. Biochem J, 2000 Nov 15. PMID 11062064, Free PMC Article
  2. Cytochrome b5 null mouse: a new model for studying inherited skin disorders and the role of unsaturated fatty acids in normal homeostasis. Finn RD, et al. Transgenic Res, 2011 Jun. PMID 20676935, Free PMC Article
  3. Impaired 17,20-Lyase Activity in Male Mice Lacking Cytochrome b5 in Leydig Cells. Sondhi V, et al. Mol Endocrinol, 2016 Apr. PMID 26974035, Free PMC Article
  4. Cytochrome b5 and cytokeratin 17 are biomarkers in bronchoalveolar fluid signifying onset of acute lung injury. Ménoret A, et al. PLoS One, 2012. PMID 22792238, Free PMC Article
  5. Defining the in Vivo Role for cytochrome b5 in cytochrome P450 function through the conditional hepatic deletion of microsomal cytochrome b5. Finn RD, et al. J Biol Chem, 2008 Nov 14. PMID 18805792, Free PMC Article

See all (35) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Demonstration of the physiologic importance of cytochrome b5 activating the 17,20-lyase reaction and the production of 19-carbon sex steroids from 21-carbon precursors in mice.
    Title: Impaired 17,20-Lyase Activity in Male Mice Lacking Cytochrome b5 in Leydig Cells.
  2. Cytochrome b5 and cytokeratin 17 are biomarkers in bronchoalveolar fluid signifying onset of acute lung injury.
    Title: Cytochrome b5 and cytokeratin 17 are biomarkers in bronchoalveolar fluid signifying onset of acute lung injury.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (1)  1 citation

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables enzyme binding IEA
Inferred from Electronic Annotation
more info
  
enables enzyme binding ISO
Inferred from Sequence Orthology
more info
  
enables heme binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables heme binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables stearoyl-CoA 9-desaturase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within fatty acid metabolic process IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
  
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane ISO
Inferred from Sequence Orthology
more info
  
is_active_in intracellular membrane-bounded organelle IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
  
located_in membrane ISO
Inferred from Sequence Orthology
more info
 PubMed 
is_active_in mitochondrial outer membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
cytochrome b5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001348159.1 → NP_001335088.1  cytochrome b5 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon in the 3' coding region with an early stop codon, compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AA051703, AC134545, AK132102, BY284726
    Consensus CDS
    CCDS89294.1
    UniProtKB/TrEMBL
    G5E850
    Related
    ENSMUSP00000025549.8, ENSMUST00000025549.14
    Conserved Domains (1) summary
    pfam00173
    Location:13 → 85
    Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain

  2. NM_025797.4 → NP_080073.1  cytochrome b5 isoform 1

    See identical proteins and their annotated locations for NP_080073.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC134545, AK132102, BY284726
    Consensus CDS
    CCDS29385.1
    UniProtKB/Swiss-Prot
    P56395
    UniProtKB/TrEMBL
    Q544Z9
    Related
    ENSMUSP00000124480.2, ENSMUST00000160180.9
    Conserved Domains (1) summary
    pfam00173
    Location:13 → 85
    Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    84869463..84897996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P56395.2 GenPept UniProtKB/Swiss-Prot:P56395

Gene LinkOut

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