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LOC109831962 cathepsin B-like [ Asparagus officinalis (garden asparagus) ]

Gene ID: 109831962, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109831962
Gene description
cathepsin B-like
Locus tag
A4U43_C02F22920
Gene type
protein coding
RefSeq status
MODEL
Organism
Asparagus officinalis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Genomic context

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See LOC109831962 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Aspof.V1 (GCF_001876935.1) 2 NC_033795.1 (84348076..84357547)

Chromosome 2 - NC_033795.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109831961 Neighboring gene DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like Neighboring gene SPX domain-containing protein 4-like Neighboring gene N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_033795.1 Chromosome 2 Reference Aspof.V1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cathepsin B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Asparagus officinalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Aspof.V1

Genomic

  1. NC_033795.1 Reference Aspof.V1

    Range
    84348076..84357547
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020399455.1 → XP_020255044.1  cathepsin B-like

    UniProtKB/TrEMBL
    A0A5P1FL66
    Conserved Domains (2) summary
    cd02620
    Location:104 → 337
    Peptidase_C1A_CathepsinB; Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an ...
    pfam08127
    Location:43 → 82
    Propeptide_C1; Peptidase family C1 propeptide
Nucleotide Protein
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Molecular Biology Databases