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LOC110017796 uncharacterized LOC110017796 [ Zea mays ]

Gene ID: 110017796, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110017796
Gene description
uncharacterized LOC110017796
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Genomic context

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See LOC110017796 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (203520672..203521315, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (203403176..203403819, complement)

Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100284025 Neighboring gene SAUR36 - auxin-responsive SAUR family member Neighboring gene auxin-responsive protein SAUR36 Neighboring gene SAUR52-auxin-responsive SAUR family member Neighboring gene SAUR55 - auxin-responsive SAUR family member

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to auxin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Auxin-responsive protein SAUR36-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001350190.1 → NP_001337119.1  Auxin-responsive protein SAUR36-like

    Status: VALIDATED

    Source sequence(s)
    EU963789
    UniProtKB/TrEMBL
    A0A1D6EUC7, A0A3L6FYZ7, A0A8J8XE08, B6TFM4
    Conserved Domains (1) summary
    pfam02519
    Location:5 → 107
    Auxin_inducible; Auxin responsive protein

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    203520672..203521315 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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