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LOC110120677 VISTA enhancer hs421 [ Homo sapiens (human) ]

Gene ID: 110120677, updated on 17-Sep-2024

Summary

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Gene symbol
LOC110120677
Gene description
VISTA enhancer hs421
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110120677 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (163987287..163988273)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (164444550..164445540)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (164843797..164844783)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985829 Neighboring gene uncharacterized LOC105373728 Neighboring gene VISTA enhancer hs170 Neighboring gene NANOG hESC enhancer GRCh37_chr2:164478034-164478535 Neighboring gene Sharpr-MPRA regulatory region 10417 Neighboring gene uncharacterized LOC107985957 Neighboring gene fidgetin, microtubule severing factor Neighboring gene VISTA enhancer hs640 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:164593125-164593641 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:164593642-164594157 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:164627636-164628835 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:164765722-164766240 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:164766241-164766758 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:164809702-164810901 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16723 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16724 Neighboring gene Sharpr-MPRA regulatory region 13497 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:165027147-165027366 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16725 Neighboring gene phosphoribosyl pyrophosphate synthetase 1 pseudogene 1 Neighboring gene cytochrome P450 family 2 subfamily C member 56, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053303.1 

    Range
    101..1087
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    163987287..163988273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    164444550..164445540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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