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LOC110120849 VISTA enhancer hs320 [ Homo sapiens (human) ]

Gene ID: 110120849, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120849
Gene description
VISTA enhancer hs320
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (75967103..75967860)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (76841217..76841974)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (77726861..77727618)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene leucine rich melanocyte differentiation associated Neighboring gene uncharacterized LOC105378367 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:77488076-77488220 Neighboring gene NANOG hESC enhancer GRCh37_chr10:77509344-77509845 Neighboring gene Sharpr-MPRA regulatory region 10683 Neighboring gene uncharacterized LOC124902463 Neighboring gene VISTA enhancer hs1679 Neighboring gene NANOG hESC enhancer GRCh37_chr10:77810766-77811299 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:77842123-77842700 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:77843280-77843857 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:77841543-77842122 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:77862769-77863468 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:77872187-77872740 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:77909300-77910208 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:77990417-77991136 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:77991137-77991854 Neighboring gene Sharpr-MPRA regulatory region 15163 Neighboring gene RNA, 7SL, cytoplasmic 518, pseudogene Neighboring gene RNA, U6 small nuclear 673, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053472.1 

    Range
    101..858
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    75967103..75967860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    76841217..76841974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
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