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LOC110120931 VISTA enhancer hs775 [ Homo sapiens (human) ]

Gene ID: 110120931, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120931
Gene description
VISTA enhancer hs775
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110120931 in Genome Data Viewer
Location:
chromosome: 18
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (79250009..79250795)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (79502123..79502909)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (77010009..77010795)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372225 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:76766909-76768108 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:76816919-76817092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:76819471-76819970 Neighboring gene ATPase phospholipid transporting 9B (putative) Neighboring gene uncharacterized LOC124904331 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:76905122-76905630 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:76905631-76906137 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13536 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:76941895-76942463 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9568 Neighboring gene MPRA-validated peak3193 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:77005320-77006519 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9569 Neighboring gene uncharacterized LOC105372226 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13537 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:77068942-77069442 Neighboring gene MPRA-validated peak3194 silencer Neighboring gene uncharacterized LOC124904332

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053553.1 

    Range
    101..887
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    79250009..79250795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    79502123..79502909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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