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LOC110120999 VISTA enhancer hs1128 [ Homo sapiens (human) ]

Gene ID: 110120999, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110120999
Gene description
VISTA enhancer hs1128
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110120999 in Genome Data Viewer
Location:
chromosome: 6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (98381984..98383173)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (99556351..99557540)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (98829860..98831049)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:98487053-98487850 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:98487851-98488648 Neighboring gene VISTA enhancer hs563 Neighboring gene VISTA enhancer hs1233 Neighboring gene microRNA 2113 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:98536551-98537051 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:98564097-98564598 Neighboring gene eukaryotic translation initiation factor 4E binding protein 2 pseudogene 3 Neighboring gene VISTA enhancer hs284 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:98864666-98865249 Neighboring gene VISTA enhancer hs1081 Neighboring gene uncharacterized LOC105377910 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:98973520-98974100 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:98974101-98974679 Neighboring gene NANOG hESC enhancer GRCh37_chr6:98998595-98999096 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:99084768-99085311 Neighboring gene VISTA enhancer hs1085 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:99150974-99151146 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:99164203-99164752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99235638-99236138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99236139-99236639 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99273031-99273536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99273537-99274042 Neighboring gene CRE2 CAGE-defined tissue-specific enhancer Neighboring gene long intergenic non-protein coding RNA PNKY

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053620.1 

    Range
    101..1290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    98381984..98383173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    99556351..99557540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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