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LOC110121080 VISTA enhancer hs1366 [ Homo sapiens (human) ]

Gene ID: 110121080, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121080
Gene description
VISTA enhancer hs1366
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (38390914..38392308)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (38215600..38216994)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (38358690..38360084)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901525 Neighboring gene BTB domain containing 9 Neighboring gene NANOG hESC enhancer GRCh37_chr6:38183178-38183679 Neighboring gene uncharacterized LOC105375045 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:38314363-38314969 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:38400730-38401422 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:38402808-38403499 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:38403500-38404192 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:38445162-38445685 Neighboring gene BTBD9 antisense RNA 1 Neighboring gene MPRA-validated peak5797 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr6:38555730-38555927 Neighboring gene TFG pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053700.1 

    Range
    101..1495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    38390914..38392308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    38215600..38216994
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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