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LOC110121125 VISTA enhancer hs1485 [ Homo sapiens (human) ]

Gene ID: 110121125, updated on 15-Mar-2024

Summary

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Gene symbol
LOC110121125
Gene description
VISTA enhancer hs1485
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
Orthologs
mouse all
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Genomic context

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Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (59056653..59058420)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (58935023..58936790)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (59522325..59524092)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene JUN divergent transcript Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:59348667-59349866 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:59351096-59351291 Neighboring gene Sharpr-MPRA regulatory region 10312 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 937 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:59387615-59388116 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:59388117-59388616 Neighboring gene long intergenic non-protein coding RNA 2777 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1094 Neighboring gene NANOG hESC enhancer GRCh37_chr1:59446941-59447485 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:59448020-59448520 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:59448521-59449021 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1095 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1096 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1098 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1099 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1100 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1101 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1102 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1103 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1104 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1105 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1106 Neighboring gene long intergenic non-protein coding RNA 1358 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:59542215-59542758 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:59543303-59543846 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:59543847-59544388 Neighboring gene PHB1 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:59572908-59573408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:59573409-59573909 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:59604949-59605450 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:59605451-59605950 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1107 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 939 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:59672311-59672933 Neighboring gene Sharpr-MPRA regulatory region 10857 Neighboring gene uncharacterized LOC729467 Neighboring gene Sharpr-MPRA regulatory region 13133 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1109 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 940 Neighboring gene FGGY divergent transcript Neighboring gene FGGY carbohydrate kinase domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053744.1 

    Range
    101..1868
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    59056653..59058420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    58935023..58936790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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