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LOC110121161 VISTA enhancer hs1622 [ Homo sapiens (human) ]

Gene ID: 110121161, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121161
Gene description
VISTA enhancer hs1622
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (55774431..55776762)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (55657730..55660061)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (56240104..56242435)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 291 Neighboring gene RNA, U6 small nuclear 830, pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:55894365-55895564 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8495 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:55991682-55991848 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8522 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1073 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1074 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:56186133-56186633 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:56185632-56186132 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:56225851-56226376 Neighboring gene uncharacterized LOC105378740 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8540 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8557 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8565 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8598 Neighboring gene long intergenic non-protein coding RNA 1753 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class Q pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053779.1 

    Range
    101..2432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    55774431..55776762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    55657730..55660061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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