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LOC110121472 VISTA enhancer hs1980 [ Homo sapiens (human) ]

Gene ID: 110121472, updated on 10-Oct-2023

Summary

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Gene symbol
LOC110121472
Gene description
VISTA enhancer hs1980
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This locus represents a conserved genomic element that can function as an enhancer. It can activate a Hsp68 promoter coupled to a LacZ reporter gene in transgenic mice. [provided by RefSeq, Jun 2015]
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Genomic context

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See LOC110121472 in Genome Data Viewer
Location:
chromosome: 10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (112997945..112998897)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (113889245..113890197)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (114757704..114758656)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902502 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:114717259-114717893 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:114722581-114723081 Neighboring gene Sharpr-MPRA regulatory region 3715 Neighboring gene Sharpr-MPRA regulatory region 6419 Neighboring gene transcription factor 7 like 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2835 Neighboring gene ribosomal protein S15a pseudogene 30 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:114766090-114766810 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:114766811-114767531 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:114780025-114780562 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:114803814-114804812 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr10:114812726-114813704 and GRCh37_chr10:114813705-114814683 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:114816611-114817110 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:114817902-114818530 Neighboring gene small nucleolar RNA, H/ACA box 87 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:114833929-114834698 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:114836009-114836602 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:114838433-114838934 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:114846446-114846998 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:114860474-114860640 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2836 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:114894802-114895390 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:114935734-114935902 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:114943039-114943540 Neighboring gene NANOG hESC enhancer GRCh37_chr10:115012887-115013388 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4069 Neighboring gene uncharacterized LOC105378490

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VISTA Enhancer Browser--a database of tissue-specific human enhancers. Visel A, et al. Nucleic Acids Res, 2007 Jan. PMID 17130149, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054085.1 

    Range
    101..1053
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    112997945..112998897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    113889245..113890197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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