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CLSTN1 calsyntenin 1 [ Numida meleagris (helmeted guineafowl) ]

Gene ID: 110408756, updated on 15-Mar-2024

Summary

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Gene symbol
CLSTN1
Gene description
calsyntenin 1
See related
Ensembl:ENSNMEG00000012670
Gene type
protein coding
RefSeq status
MODEL
Organism
Numida meleagris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Numididae; Numida
Orthologs
human mouse all
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Genomic context

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See CLSTN1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
19
Annotation release Status Assembly Chr Location
100 current NumMel1.0 (GCF_002078875.1) 20 NC_034428.1 (3621914..3657909, complement)

Chromosome 20 - NC_034428.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 201 Neighboring gene forkhead box protein L2-like Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta Neighboring gene catenin beta interacting protein 1 Neighboring gene leucine zipper and CTNNBIP1 domain containing Neighboring gene nicotinamide nucleotide adenylyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034428.1 Chromosome 20 Reference NumMel1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables X11-like protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables amyloid-beta binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calsyntenin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Numida meleagris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NumMel1.0 Primary Assembly

Genomic

  1. NC_034428.1 Reference NumMel1.0 Primary Assembly

    Range
    3621914..3657909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021417825.1 → XP_021273500.1  calsyntenin-1 isoform X4

    Conserved Domains (1) summary
    cd11304
    Location:40 → 148
    Cadherin_repeat; Cadherin tandem repeat domain

  2. XM_021417822.1 → XP_021273497.1  calsyntenin-1 isoform X1

    Conserved Domains (1) summary
    cd11304
    Location:40 → 158
    Cadherin_repeat; Cadherin tandem repeat domain

  3. XM_021417823.1 → XP_021273498.1  calsyntenin-1 isoform X2

    Related
    ENSNMEP00000014485.1, ENSNMET00000021854.1
    Conserved Domains (1) summary
    cd11304
    Location:40 → 148
    Cadherin_repeat; Cadherin tandem repeat domain

  4. XM_021417824.1 → XP_021273499.1  calsyntenin-1 isoform X3

    Related
    ENSNMEP00000014474.1, ENSNMET00000021836.1
    Conserved Domains (1) summary
    cd11304
    Location:40 → 158
    Cadherin_repeat; Cadherin tandem repeat domain
Nucleotide Protein
Heading Accession and Version

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