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LOC110437691 putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial [ Sorghum bicolor (sorghum) ]

Gene ID: 110437691, updated on 22-Oct-2023

Summary

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Gene symbol
LOC110437691
Gene description
putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial
Locus tag
SORBI_3008G127550
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC110437691 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 8 NC_012877.2 (55244214..55247965, complement)

Chromosome 8 - NC_012877.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8068831 Neighboring gene transmembrane protein 205 Neighboring gene BTB/POZ and MATH domain-containing protein 1 Neighboring gene uncharacterized LOC110429856

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012877.2 Chromosome 8 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012877.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    55244214..55247965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021466262.1 → XP_021321937.1  putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial isoform X2

    Conserved Domains (4) summary
    TIGR00756
    Location:432 → 459
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:187 → 214
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:218 → 267
    PPR_2; PPR repeat family
    cl25449
    Location:398 → 442
    PPR_2; PPR repeat family

  2. XM_021466261.1 → XP_021321936.1  putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial isoform X1

    Conserved Domains (3) summary
    sd00004
    Location:467 → 494
    PPR; PPR repeat [structural motif]
    pfam12854
    Location:600 → 632
    PPR_1; PPR repeat
    cl25449
    Location:178 → 592
    PPR_2; PPR repeat family
Nucleotide Protein
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