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psmb13a proteasome 20S subunit beta 13a [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110488346, updated on 15-Mar-2024

Summary

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Gene symbol
psmb13a
Gene description
proteasome 20S subunit beta 13a
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
PSB7; PSMB10(b)
Orthologs
zebrafish all
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Genomic context

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See psmb13a in Genome Data Viewer
Location:
chromosome: 32
Exon count:
8
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 32 NC_050572.1 (33353230..33356613)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 14 NC_035090.1 (28542317..28545646)

Chromosome 32 - NC_050572.1Genomic Context describing neighboring genes Neighboring gene antigen peptide transporter 2 Neighboring gene proteasome 20S subunit beta 9a Neighboring gene proteasome 20S subunit beta 12 Neighboring gene proteasome 20S subunit beta 8A Neighboring gene DLA class I histocompatibility antigen, A9/A9 alpha chain-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables threonine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
proteasome 20S subunit beta 13a
Names
Proteasome subunit beta type 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_050572.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    33353230..33356613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021560566.2 → XP_021416241.2  proteasome 20S subunit beta 13a isoform X1

    UniProtKB/TrEMBL
    C1BHA5, Q5FBT5
    Conserved Domains (2) summary
    cd03763
    Location:44 → 232
    proteasome_beta_type_7; proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that ...
    pfam12465
    Location:238 → 271
    Pr_beta_C; Proteasome beta subunits C terminal

  2. XM_036971394.1 → XP_036827289.1  proteasome 20S subunit beta 13a isoform X2

    UniProtKB/TrEMBL
    C1BFW2
    Conserved Domains (1) summary
    cd03763
    Location:44 → 232
    proteasome_beta_type_7; proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that ...

  3. XM_021560567.2 → XP_021416242.2  proteasome 20S subunit beta 13a isoform X3

    UniProtKB/TrEMBL
    C1BEK5, Q5FBT5
    Conserved Domains (2) summary
    pfam12465
    Location:204 → 237
    Pr_beta_C; Proteasome beta subunits C terminal
    cl00467
    Location:44 → 190
    Ntn_hydrolase; The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a ...
Nucleotide Protein
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