Igkj1 immunoglobulin kappa joining 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Igkj1provided by MGI
Official Full Name: immunoglobulin kappa joining 1provided by MGI
Primary source: MGI:MGI:1316689
See related: Ensembl:ENSMUSG00000076604 IMGT/GENE-DB:IGKJ1; AllianceGenome:MGI:1316689
Gene type: other
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Igk-J1
Summary: Acts upstream of or within response to lipopolysaccharide and response to xenobiotic stimulus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: 6 C1; 6 32.04 cM

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	6	NC_000072.7 (70699546..70699583)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	6	NC_000072.6 (70722562..70722599)

Chromosome 6 - NC_000072.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

B-cells from mice carrying the V(kappa)1-J(kappa)1 transgenic L chains were tolerized almost exclusively by L chain receptor editing in an affinity-independent manner.
Title: The efficiency of B cell receptor (BCR) editing is dependent on BCR light chain rearrangement status.

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Targeted (2) 1 citation

General gene information

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Markers

RH127636 (e-PCR)
- UniSTS:210946

Igk-C (e-PCR), detects polymorphism
- UniSTS:143506

PMC125515P1 (e-PCR)
- UniSTS:270499

AV061724 (e-PCR)
- UniSTS:179389

Other Names

immunoglobulin kappa chain, joining region, 1

Gene Ontology Provided by MGI

Process	Evidence Code	Pubs
acts_upstream_of_or_within response to lipopolysaccharide	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within response to xenobiotic stimulus	IDA Inferred from Direct Assay more info	PubMed

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.