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GPC3-AS1 GPC3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 110806308, updated on 10-Oct-2023

Summary

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Official Symbol
GPC3-AS1provided by HGNC
Official Full Name
GPC3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:52897
See related
Ensembl:ENSG00000286096 AllianceGenome:HGNC:52897
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See GPC3-AS1 in Genome Data Viewer
Location:
Xq26.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (133897443..133897921)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (132222569..132223047)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (133031470..133031948)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene glypican 3 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:132808889-132809502 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:132819803-132820460 Neighboring gene ribosomal protein S24 pseudogene 19 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29973 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29974 Neighboring gene ribosomal protein SA pseudogene 63 Neighboring gene NANOG hESC enhancer GRCh37_chrX:132999651-133000493 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29975 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29976 Neighboring gene uncharacterized LOC124905220 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:133115144-133115656 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:133118772-133119326 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:133119327-133119881 Neighboring gene MPRA-validated peak7430 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chrX:133160773-133160986 Neighboring gene translocase of inner mitochondrial membrane 8B pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ELK1-activated GPC3-AS1/GPC3 axis promotes the proliferation and migration of cervical cancer cells. Hu R, et al. J Gene Med, 2019 Aug. PMID 31168873
  2. Long noncoding RNA glypican 3 (GPC3) antisense transcript 1 promotes hepatocellular carcinoma progression via epigenetically activating GPC3. Zhu XT, et al. FEBS J, 2016 Oct. PMID 27573079

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Other Names

  • glypican 3 antisense transcript 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_148713.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AF085935
    Related
    ENST00000651551.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    133897443..133897921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    132222569..132223047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases