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snrpe small nuclear ribonucleoprotein polypeptide E [ Acanthochromis polyacanthus (spiny chromis) ]

Gene ID: 110951270, updated on 15-Mar-2024

Summary

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Gene symbol
snrpe
Gene description
small nuclear ribonucleoprotein polypeptide E
See related
Ensembl:ENSAPOG00000024096
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthochromis polyacanthus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Acanthochromis
Orthologs
human zebrafish all
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Genomic context

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See snrpe in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current KAUST_Apoly_ChrSc (GCF_021347895.1) 5 NC_067117.1 (27167285..27171705, complement)

Chromosome 5 - NC_067117.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene wingless-type MMTV integration site family, member 4 Neighboring gene cell division cycle 42 Neighboring gene cilia- and flagella-associated protein 57-like Neighboring gene UF2 component of NDC80 kinetochore complex Neighboring gene EF-hand and coiled-coil domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067117.1 Chromosome 5 Reference KAUST_Apoly_ChrSc

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein E

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_021347895.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference KAUST_Apoly_ChrSc

Genomic

  1. NC_067117.1 Reference KAUST_Apoly_ChrSc

    Range
    27167285..27171705 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022194241.2 → XP_022049933.1  small nuclear ribonucleoprotein E

    UniProtKB/TrEMBL
    A0A3Q1FY38
    Related
    ENSAPOP00000020517.1
    Conserved Domains (1) summary
    cd01718
    Location:11 → 89
    Sm_E; Sm protein E
Nucleotide Protein
Heading Accession and Version

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