U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110973767 autophagy protein 12-like [ Acanthaster planci (crown-of-thorns starfish) ]

Gene ID: 110973767, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC110973767
Gene description
autophagy protein 12-like
See related
EnsemblRapid:LOC110973767
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthaster planci
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Asterozoa; Asteroidea; Valvatacea; Valvatida; Acanthasteridae; Acanthaster
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC110973767 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current OKI-Apl_1.0 (GCF_001949145.1) Unplaced Scaffold NW_019091365.1 (1734851..1738433)

NW_019091365.1Genomic Context describing neighboring genes Neighboring gene actin-related protein 2/3 complex subunit 1A-like Neighboring gene histone H3-like centromeric protein CSE4 Neighboring gene cytoplasmic phosphatidylinositol transfer protein 1-like Neighboring gene cilia- and flagella-associated protein 52-like Neighboring gene somatostatin receptor type 5-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_019091365 Unplaced Scaffold Reference OKI-Apl_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in C-terminal protein lipidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Atg12-Atg5-Atg16 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
autophagy protein 12-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Acanthaster planci Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OKI-Apl_1.0 Primary Assembly

Genomic

  1. NW_019091365.1 Reference OKI-Apl_1.0 Primary Assembly

    Range
    1734851..1738433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022224853.1 → XP_022080545.1  autophagy protein 12-like

    UniProtKB/TrEMBL
    A0A8B7XKR3
    Related
    XP_022080545.1, XM_022224853.1
    Conserved Domains (1) summary
    pfam04110
    Location:44 → 130
    APG12; Ubiquitin-like autophagy protein Apg12
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases