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LOC111043177 endoribonuclease Dcr-1 [ Myzus persicae (green peach aphid) ]

Gene ID: 111043177, updated on 10-May-2024

Summary

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Gene symbol
LOC111043177
Gene description
endoribonuclease Dcr-1
See related
EnsemblRapid:LOC111043177
Gene type
protein coding
RefSeq status
MODEL
Organism
Myzus persicae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Sternorrhyncha; Aphidomorpha; Aphidoidea; Aphididae; Macrosiphini; Myzus
Also known as
dcr-1; dicer-1
Orthologs
fruit fly all
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Genomic context

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See LOC111043177 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current MPER_G0061.0 (GCF_001856785.1) Unplaced Scaffold NW_019100802.1 (341967..354340)

NW_019100802.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111043168 Neighboring gene ring canal kelch homolog Neighboring gene transcription initiation factor TFIID subunit 7-like Neighboring gene UDP-N-acetylglucosamine pyrophosphorylase mmy Neighboring gene uncharacterized LOC111043107

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019100802 Unplaced Scaffold Reference MPER_G0061.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deoxyribonuclease I activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonuclease III activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic DNA fragmentation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pre-miRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in siRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoribonuclease Dcr-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Myzus persicae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MPER_G0061.0 Primary Assembly

Genomic

  1. NW_019100802.1 Reference MPER_G0061.0 Primary Assembly

    Range
    341967..354340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022328071.1 → XP_022183763.1  endoribonuclease Dcr-1

    UniProtKB/TrEMBL
    A0A5C0BB44
    Related
    XP_022183763.1, XM_022328071.1
    Conserved Domains (7) summary
    cd00593
    Location:1604 → 1769
    RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...
    cd15903
    Location:232 → 336
    Dicer_PBD; Partner-binding domain of the endoribonuclease Dicer
    cl38915
    Location:412 → 542
    DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases
    pfam03368
    Location:608 → 700
    Dicer_dimer; Dicer dimerization domain
    cd10843
    Location:1773 → 1831
    DSRM_DICER; double-stranded RNA binding motif of endoribonuclease Dicer and similar proteins
    cl00301
    Location:874 → 996
    PAZ; PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a ...
    cl28899
    Location:14 → 200
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  2. XM_022328072.1 → XP_022183764.1  endoribonuclease Dcr-1

    UniProtKB/TrEMBL
    A0A5C0BB44
    Related
    XP_022183764.1, XM_022328072.1
    Conserved Domains (7) summary
    cd00593
    Location:1604 → 1769
    RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...
    cd15903
    Location:232 → 336
    Dicer_PBD; Partner-binding domain of the endoribonuclease Dicer
    cl38915
    Location:412 → 542
    DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases
    pfam03368
    Location:608 → 700
    Dicer_dimer; Dicer dimerization domain
    cd10843
    Location:1773 → 1831
    DSRM_DICER; double-stranded RNA binding motif of endoribonuclease Dicer and similar proteins
    cl00301
    Location:874 → 996
    PAZ; PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a ...
    cl28899
    Location:14 → 200
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

RNA

  1. XR_002605542.1 RNA Sequence

    Related
    XR_002605542.1
Nucleotide Protein Strain
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