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BaPV2p1 polyprotein [ Bat picornavirus 2 ]

Gene ID: 11117458, updated on 16-Aug-2018

Summary

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Gene symbol
BaPV2p1
Gene description
polyprotein
Locus tag
BaPV2p1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bat picornavirus 2 (strain: MH9F, nat-host: Miniopterus magnater)
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae
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Genomic context

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Sequence:
NC_015941.1 (420..7538)

NC_015941.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_015941.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete genome analysis of three novel picornaviruses from diverse bat species. Lau SK, et al. J Virol, 2011 Sep. PMID 21697464, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
polyprotein
Names
L
VP4
VP2
VP3
VP1
2A
2A
2B
2B
2C
3A
3B
3C
3D

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_015941.1 Reference assembly

    Range
    420..7538
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_004782529.1 polyprotein [Bat picornavirus 2]

    See identical proteins and their annotated locations for YP_004782529.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G0Y2E2
    Conserved Domains (7) summary
    cd00205
    Location:425 → 603
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    pfam00073
    Location:162 → 342
    Rhv; picornavirus capsid protein
    pfam00548
    Location:1715 → 1879
    Peptidase_C3; 3C cysteine protease (picornain 3C)
    pfam00910
    Location:1373 → 1473
    RNA_helicase; RNA helicase
    pfam01552
    Location:1129 → 1243
    Pico_P2B; Picornavirus 2B protein
    pfam08727
    Location:1598 → 1657
    P3A; Poliovirus 3A protein like
    cl02808
    Location:1911 → 2370
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

  2. YP_004782556.1 L

  3. YP_004782557.1 VP4

    Conserved Domains (1) summary
    pfam02226
    Location:1 → 65
    Pico_P1A; Picornavirus coat protein (VP4)

  4. YP_004782558.1 VP2

    Conserved Domains (1) summary
    pfam00073
    Location:24 → 204
    Rhv; picornavirus capsid protein

  5. YP_004782559.1 VP3

    Conserved Domains (1) summary
    cd00205
    Location:49 → 227
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

  6. YP_004782560.1 VP1

    Conserved Domains (1) summary
    cd00205
    Location:78 → 270
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

  7. YP_004782561.1 2A

  8. YP_004782562.1 2A

  9. YP_004782563.1 2B

    Conserved Domains (1) summary
    pfam01552
    Location:7 → 112
    Pico_P2B; Picornavirus 2B protein

  10. YP_004782564.1 2B

    Conserved Domains (1) summary
    pfam01552
    Location:6 → 105
    Pico_P2B; Picornavirus 2B protein

  11. YP_004782565.1 2C

    Conserved Domains (1) summary
    pfam00910
    Location:131 → 231
    RNA_helicase; RNA helicase

  12. YP_004782566.1 3A

    Conserved Domains (1) summary
    pfam08727
    Location:21 → 80
    P3A; Poliovirus 3A protein like

  13. YP_004782567.1 3B

  14. YP_004782568.1 3C

    Conserved Domains (1) summary
    pfam00548
    Location:1 → 165
    Peptidase_C3; 3C cysteine protease (picornain 3C)

  15. YP_004782569.1 3D

    Conserved Domains (1) summary
    cl02808
    Location:14 → 473
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
Nucleotide Protein
Heading Accession and Version

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