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LINC02577 long intergenic non-protein coding RNA 2577 [ Homo sapiens (human) ]

Gene ID: 111216280, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02577provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2577provided by HGNC
Primary source
HGNC:HGNC:53749
See related
Ensembl:ENSG00000228742 AllianceGenome:HGNC:53749
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CLAN; SLINKY
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
7q22.3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (106775018..106838482)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (108091030..108154509)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (106415464..106478927)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375440 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26487 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18535 Neighboring gene MPRA-validated peak6673 silencer Neighboring gene coiled-coil domain containing 71 like Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:106358550-106359749 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26488 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26489 Neighboring gene MPRA-validated peak6674 silencer Neighboring gene MPRA-validated peak6675 silencer Neighboring gene Sharpr-MPRA regulatory region 6701 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:106415535-106416734 Neighboring gene RNA, 5S ribosomal pseudogene 236 Neighboring gene Sharpr-MPRA regulatory region 12136 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26490 Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma Neighboring gene CRISPRi-validated cis-regulatory element chr7.4040 Neighboring gene CRISPRi-validated cis-regulatory element chr7.4041 Neighboring gene CRISPRi-validated cis-regulatory element chr7.4042 Neighboring gene CRISPRi-validated cis-regulatory element chr7.4045 Neighboring gene CRISPRi-validated cis-regulatory element chr7.4046 Neighboring gene CRISPRi-validated cis-regulatory element chr7.4048 Neighboring gene CRISPRi-validated cis-regulatory element chr7.4050 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:106681203-106681414 Neighboring gene Sharpr-MPRA regulatory region 8060 Neighboring gene PRKAR2B antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 12069 Neighboring gene protein kinase cAMP-dependent type II regulatory subunit beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel lincRNA SLINKY is a prognostic biomarker in kidney cancer. Gong X, et al. Oncotarget, 2017 Mar 21. PMID 28423633, Free PMC Article
  2. Long noncoding RNA CLAN promotes lymphangiogenesis in the colorectal carcinoma. Guo Q, et al. Virchows Arch, 2022 Dec. PMID 36301367
  3. Epidermal long non-coding RNAs are regulated by ultraviolet irradiation. Kim KH, et al. Gene, 2017 Dec 30. PMID 28942040
  4. Human chromosome 7: DNA sequence and biology. Scherer SW, et al. Science, 2003 May 2. PMID 12690205, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • Survival-predictive LincRNA in Kidney cancer
  • colorectal cancer lymphangiogenesis associated lncRNA

Clone Names

  • AC002384.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_170301.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002384, AC025728

  2. NR_170302.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002384, AC025728

  3. NR_170303.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002384, AC025728

  4. NR_170304.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002384, AC025728

  5. NR_170305.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002384, AC025728

  6. NR_170306.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002384, AC025728
    Related
    ENST00000655590.1

  7. NR_170307.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002384, AC025728

  8. NR_170308.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002384, AC025728
    Related
    ENST00000650196.1

  9. NR_170309.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC002384, AC025728
    Related
    ENST00000602761.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    106775018..106838482
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    108091030..108154509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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