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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001282556.2 → NP_001269485.1 HERV-H LTR-associating protein 2 isoform a precursor
See identical proteins and their annotated locations for NP_001269485.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) represents the use of an alternate promoter and differs in the 5' UTR, compared to variant 1. Variants 1, 2 and 3 encode the same protein (isoform a).
- Source sequence(s)
-
AC078855, AC135308, AK000692, BM980981, BP293912
- Consensus CDS
-
CCDS46883.1
- UniProtKB/Swiss-Prot
- B4DKN2, D3DN60, Q9NWQ6, Q9UM44
- Related
- ENSP00000419207.1, ENST00000467761.6
- Conserved Domains (2) summary
-
- pfam07686
Location:231 → 330
- V-set; Immunoglobulin V-set domain
- cl11960
Location:47 → 125
- Ig; Immunoglobulin domain
-
NM_001282557.2 → NP_001269486.1 HERV-H LTR-associating protein 2 isoform a precursor
See identical proteins and their annotated locations for NP_001269486.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) represents the use of an alternate promoter and differs in the 5' UTR, compared to variant 1. Variants 1, 2 and 3 encode the same protein (isoform a).
- Source sequence(s)
-
AC135308, AF126162, BM980981
- Consensus CDS
-
CCDS46883.1
- UniProtKB/Swiss-Prot
- B4DKN2, D3DN60, Q9NWQ6, Q9UM44
- Related
- ENSP00000417856.2, ENST00000489514.6
- Conserved Domains (2) summary
-
- pfam07686
Location:231 → 330
- V-set; Immunoglobulin V-set domain
- cl11960
Location:47 → 125
- Ig; Immunoglobulin domain
-
NM_001282558.2 → NP_001269487.1 HERV-H LTR-associating protein 2 isoform b precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) represents the use of an alternate promoter, differs in the 5' UTR and lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. The encoded protein (isoform b) is shorter than isoform a.
- Source sequence(s)
-
AC078855, AC135308, AK315109, BC035971, BM980981
- Consensus CDS
-
CCDS74975.1
- UniProtKB/TrEMBL
-
C9J7D0
- Related
- ENSP00000418284.1, ENST00000491820.5
- Conserved Domains (4) summary
-
- cd00098
Location:140 → 225
- IgC; Immunoglobulin Constant domain
- smart00410
Location:237 → 334
- IG_like; Immunoglobulin like
- pfam07686
Location:231 → 330
- V-set; Immunoglobulin V-set domain
- cl11960
Location:61 → 122
- Ig; Immunoglobulin domain
-
NM_001282559.2 → NP_001269488.1 HERV-H LTR-associating protein 2 isoform c
See identical proteins and their annotated locations for NP_001269488.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) represents the use of an alternate promoter, and has multiple differences compared to variant 1. These differences result in a distinct 5' UTR and cause translation initiation at an alternate start codon, compared to variant 1. The encoded protein (isoform c) has a distinct N-terminus and is shorter than isoform a.
- Source sequence(s)
-
AC078855, AC135308, AK296644, BC035971, BM980981
- Consensus CDS
-
CCDS63713.1
- UniProtKB/TrEMBL
-
H7C523
- Related
- ENSP00000418345.1, ENST00000467562.5
- Conserved Domains (3) summary
-
- cd00098
Location:76 → 161
- IgC; Immunoglobulin Constant domain
- smart00410
Location:173 → 270
- IG_like; Immunoglobulin like
- pfam07686
Location:167 → 266
- V-set; Immunoglobulin V-set domain
-
NM_001370244.1 → NP_001357173.1 HERV-H LTR-associating protein 2 isoform a precursor
Status: REVIEWED
- Source sequence(s)
-
AC078855, AC135308
- Consensus CDS
-
CCDS46883.1
- UniProtKB/Swiss-Prot
- B4DKN2, D3DN60, Q9NWQ6, Q9UM44
- Conserved Domains (2) summary
-
- pfam07686
Location:231 → 330
- V-set; Immunoglobulin V-set domain
- cl11960
Location:47 → 125
- Ig; Immunoglobulin domain
-
NM_007072.4 → NP_009003.1 HERV-H LTR-associating protein 2 isoform a precursor
See identical proteins and their annotated locations for NP_009003.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a). Variants 1, 2 and 3 encode the same protein.
- Source sequence(s)
-
AC078855, AC135308, BC035971, BM980981
- Consensus CDS
-
CCDS46883.1
- UniProtKB/Swiss-Prot
- B4DKN2, D3DN60, Q9NWQ6, Q9UM44
- Related
- ENSP00000350402.5, ENST00000357759.9
- Conserved Domains (2) summary
-
- pfam07686
Location:231 → 330
- V-set; Immunoglobulin V-set domain
- cl11960
Location:47 → 125
- Ig; Immunoglobulin domain