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LOC111591772 sodium- and chloride-dependent GABA transporter 1-like [ Ceratitis capitata (Mediterranean fruit fly) ]

Gene ID: 111591772, updated on 22-Oct-2023

Summary

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Gene symbol
LOC111591772
Gene description
sodium- and chloride-dependent GABA transporter 1-like
See related
EnsemblRapid:LOC111591772
Gene type
protein coding
RefSeq status
MODEL
Organism
Ceratitis capitata
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Ceratitis; Ceratitis
Also known as
SC6A1
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC111591772 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Ccap_2.1 (GCF_000347755.3) Unplaced Scaffold NW_019376864.1 (12057..21080, complement)

NW_019376864.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019376864 Unplaced Scaffold Reference Ccap_2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genomic perspective to assessing quality of mass-reared SIT flies used in Mediterranean fruit fly (Ceratitis capitata) eradication in California. Calla B, et al. BMC Genomics, 2014 Feb 5. PMID 24495485, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium- and chloride-dependent GABA transporter 1-like
Names
Sodium- and chloride-dependent GABA transporter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ceratitis capitata Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ccap_2.1 Primary Assembly

Genomic

  1. NW_019376864.1 Reference Ccap_2.1 Primary Assembly

    Range
    12057..21080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023303462.1 → XP_023159230.1  sodium- and chloride-dependent GABA transporter 1-like

    UniProtKB/TrEMBL
    W8C964
    Related
    XP_023159230.1, XM_023303462.1
    Conserved Domains (1) summary
    cd11496
    Location:72 → 625
    SLC6sbd-TauT-like; Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain
Nucleotide Protein
Heading Accession and Version

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