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PIGPP1 phosphatidylinositol glycan anchor biosynthesis class P pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 112214169, updated on 17-Sep-2024

Summary

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Official Symbol
PIGPP1provided by HGNC
Official Full Name
phosphatidylinositol glycan anchor biosynthesis class P pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:45153
See related
AllianceGenome:HGNC:45153
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See PIGPP1 in Genome Data Viewer
Location:
2p15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (62170900..62171196)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (62177128..62177424)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (62398035..62398331)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene copper metabolism domain containing 1 Neighboring gene uncharacterized LOC124906012 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15844 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15845 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15846 Neighboring gene MPRA-validated peak3724 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15848 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15849 Neighboring gene ribosomal protein SA pseudogene 26 Neighboring gene uncharacterized LOC124906013 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:62421735-62422342 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11533 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:62422949-62423555 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11535 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15850 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:62429250-62429750 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:62429751-62430251 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 Neighboring gene microRNA 5192

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_066003.1 

    Range
    101..397
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    62170900..62171196
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    62177128..62177424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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