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tfr2 transferrin receptor 2 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112227370, updated on 18-Jun-2024

Summary

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Gene symbol
tfr2
Gene description
transferrin receptor 2
See related
Ensembl:ENSOTSG00005046833
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See tfr2 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
18
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG15 NC_056443.1 (39564430..39651513)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Chromosome 28 NC_037124.1 (17239389..17266652)

Linkage Group LG15 - NC_056443.1Genomic Context describing neighboring genes Neighboring gene high mobility group protein B2 Neighboring gene CTS telomere maintenance complex component 1 Neighboring gene uncharacterized LOC112240955 Neighboring gene dentin sialophosphoprotein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transferrin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endocytic iron import into cell IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transferrin transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transferrin receptor protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056443.1 Reference Otsh_v2.0 Primary Assembly

    Range
    39564430..39651513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042298584.1 → XP_042154518.1  transferrin receptor protein 2

    Related
    ENSOTSP00005148105.1, ENSOTST00005151391.1
    Conserved Domains (2) summary
    cd02128
    Location:225 → 422
    PA_TfR; Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. ...
    cd09848
    Location:431 → 661
    M28_TfR; M28 Zn-peptidase Transferrin Receptor family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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