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LOC112239093 high mobility group protein B2 [ Oncorhynchus tshawytscha (Chinook salmon) ]

Gene ID: 112239093, updated on 18-Jun-2024

Summary

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Gene symbol
LOC112239093
Gene description
high mobility group protein B2
See related
Ensembl:ENSOTSG00005057930
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus tshawytscha
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC112239093 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
6
Annotation release Status Assembly LG Location
101 current Otsh_v2.0 (GCF_018296145.1) LG15 NC_056443.1 (39436752..39495654, complement)
100 previous assembly Otsh_v1.0 (GCF_002872995.1) Unplaced Scaffold NW_020129844.1 (100778..113652)

Linkage Group LG15 - NC_056443.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112265788 Neighboring gene uncharacterized LOC121839434 Neighboring gene CTS telomere maintenance complex component 1 Neighboring gene transferrin receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding, bending IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein B2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Otsh_v2.0 Primary Assembly

Genomic

  1. NC_056443.1 Reference Otsh_v2.0 Primary Assembly

    Range
    39436752..39495654 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042298583.1 → XP_042154517.1  high mobility group protein B2

    Related
    ENSOTSP00005143270.1, ENSOTST00005187188.1
    Conserved Domains (2) summary
    COG5648
    Location:3 → 161
    NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
    cd01390
    Location:97 → 162
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
Nucleotide Protein
Heading Accession and Version

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