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CDK13-DT CDK13 divergent transcript [ Homo sapiens (human) ]

Gene ID: 112267983, updated on 15-Mar-2024

Summary

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Official Symbol
CDK13-DTprovided by HGNC
Official Full Name
CDK13 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55407
See related
Ensembl:ENSG00000259826 AllianceGenome:HGNC:55407
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
all
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Genomic context

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Location:
7p14.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (39947521..39949419, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (40105023..40106919, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (39987120..39989018, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928688 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:39894264-39894799 Neighboring gene RWD domain containing 4 pseudogene 2 Neighboring gene RNA, 7SL, cytoplasmic 496, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:39954013-39954514 Neighboring gene Sharpr-MPRA regulatory region 5390 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25884 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:39988304-39989223 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:39989224-39990142 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18115 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18116 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:39991063-39991981 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:40015128-40015628 Neighboring gene cyclin dependent kinase 13 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:40017861-40018605 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25889 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:40095303-40095542 Neighboring gene HIG1 hypoxia inducible domain family member 1A pseudogene 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_158201.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC072061, BC035135
    Related
    ENST00000569710.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    39947521..39949419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    40105023..40106919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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