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LOC112268079 uncharacterized LOC112268079 [ Homo sapiens (human) ]

Gene ID: 112268079, updated on 17-Sep-2024

Summary

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Gene symbol
LOC112268079
Gene description
uncharacterized LOC112268079
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC112268079 in Genome Data Viewer
Location:
11q13.5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (76209827..76211532)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (76139543..76141248)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene UV radiation resistance associated Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 1A pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5282 Neighboring gene RNA, 5S ribosomal pseudogene 344 Neighboring gene MPRA-validated peak1353 silencer Neighboring gene VISTA enhancer hs1435 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:75769360-75769545 Neighboring gene NANOG hESC enhancer GRCh37_chr11:75831587-75832314 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75863001-75863881 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75875819-75876512 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75886811-75887552 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75887553-75888295 Neighboring gene Sharpr-MPRA regulatory region 10154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75895382-75896163 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75896164-75896944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75897726-75898505 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3778 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75918003-75918670 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3779 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75920005-75920671 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75920672-75921338 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3780 Neighboring gene CRISPRi-validated cis-regulatory element chr11.4413 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75946077-75946622 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75941095-75941596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:75944436-75944982 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:75945530-75946076 Neighboring gene Wnt family member 11 Neighboring gene long intergenic non-protein coding RNA 2761 Neighboring gene tRNA-Pro (anticodon AGG) 2-4 Neighboring gene tRNA-Pro (anticodon TGG) 2-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    76209827..76211532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002957259.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    76139543..76141248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082316.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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