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LINC02856 long intergenic non-protein coding RNA 2856 [ Homo sapiens (human) ]

Gene ID: 112268216, updated on 22-Oct-2024

Summary

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Official Symbol
LINC02856provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2856provided by HGNC
Primary source
HGNC:HGNC:54393
See related
Ensembl:ENSG00000285594 AllianceGenome:HGNC:54393
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LINC02856 in Genome Data Viewer
Location:
18p11.22
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (9646110..9648590)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (9809480..9811971)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene protein phosphatase 4 regulatory subunit 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:9570108-9570290 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:9574228-9574738 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:9574739-9575249 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13076 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9284 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9285 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9286 Neighboring gene PPP4R1 antisense RNA 1 Neighboring gene RNA, U6 small nuclear 903, pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr18:9643443-9644016 Neighboring gene H3K27ac hESC enhancer GRCh37_chr18:9644964-9645470 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13077 Neighboring gene uncharacterized LOC124904244 Neighboring gene keratin 18 pseudogene 8 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:9697747-9697949

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    9646110..9648590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002958226.1 RNA Sequence

    Related
    ENST00000649128.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    9809480..9811971
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088434.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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