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LOC112268271 translation initiation factor IF-2 [ Homo sapiens (human) ]

Gene ID: 112268271, updated on 15-Mar-2024

Summary

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Gene symbol
LOC112268271
Gene description
translation initiation factor IF-2
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
all
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Genomic context

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See LOC112268271 in Genome Data Viewer
Location:
20p11.22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (21499265..21506405, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (21555909..21563049, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (21479903..21487043, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372558 Neighboring gene RN7SK pseudogene 140 Neighboring gene Sharpr-MPRA regulatory region 14823 Neighboring gene hydroxysteroid 17-beta dehydrogenase 12 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12716 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:21485880-21486380 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17625 Neighboring gene VISTA enhancer hs1205 Neighboring gene glutathione S-transferase mu 3 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:21496399-21496899 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:21501527-21502341 Neighboring gene NK2 homeobox 2 Neighboring gene Beta cell long intergenic noncoding RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171652.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133325

  2. NR_171653.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133325

  3. NR_171654.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133325

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    21499265..21506405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    21555909..21563049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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