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LOC112268436 uncharacterized LOC112268436 [ Homo sapiens (human) ]

Gene ID: 112268436, updated on 17-Sep-2024

Summary

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Gene symbol
LOC112268436
Gene description
uncharacterized LOC112268436
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC112268436 in Genome Data Viewer
Location:
2p22.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (39901937..39904495)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (39910934..39913492)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene transmembrane protein 178A Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:39948161-39948662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:39948663-39949162 Neighboring gene uncharacterized LOC124905994 Neighboring gene NANOG hESC enhancer GRCh37_chr2:39999086-40000066 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:40016715-40017914 Neighboring gene THUMP domain containing 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:40065678-40066225 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15619 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:40128919-40130118 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:40147641-40148300 Neighboring gene zinc finger protein 19 pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:40165083-40166282 Neighboring gene SLC8A1 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:40240930-40241498 Neighboring gene Sharpr-MPRA regulatory region 6978 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:40371191-40371761 Neighboring gene solute carrier family 8 member A1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:40437586-40438180 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:40469400-40469950 Neighboring gene NANOG hESC enhancer GRCh37_chr2:40545966-40546467 Neighboring gene peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    39901937..39904495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002959475.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    39910934..39913492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071985.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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