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LOC112268445 uncharacterized LOC112268445 [ Homo sapiens (human) ]

Gene ID: 112268445, updated on 10-Oct-2023

Summary

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Gene symbol
LOC112268445
Gene description
uncharacterized LOC112268445
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC112268445 in Genome Data Viewer
Location:
3p25.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (14036416..14047153, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (14038352..14049088, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (14077916..14088653, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak4544 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13975708-13976208 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:13976209-13976709 Neighboring gene vomeronasal 1 receptor 20 pseudogene Neighboring gene FYVE, RhoGEF and PH domain containing 5 pseudogene 1 Neighboring gene tetrapeptide repeat homeobox like (pseudogene) Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:14004233-14005432 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:14058498-14059697 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_64840 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:14098805-14100004 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:14106267-14106839 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19495 Neighboring gene vomeronasal 1 receptor 21 pseudogene Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:14163053-14163787 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:14163788-14164523 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19496 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14088 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:14165995-14166729 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_173398.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC069462, AC090004

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    14036416..14047153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    14038352..14049088 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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