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ZNF260 zinc finger protein 260 [ Bos taurus (domestic cattle) ]

Gene ID: 112442192, updated on 4-Oct-2024

Summary

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Gene symbol
ZNF260
Gene description
zinc finger protein 260
See related
BGD:BT23160; Ensembl:ENSBTAG00000033563 Ensembl:ENSBTAG00000060491
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
ZNF529
Orthologs
human mouse all
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Genomic context

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See ZNF260 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (46988079..47037921)

Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 567 Neighboring gene zinc finger protein 461 Neighboring gene zinc finger protein 382 Neighboring gene zinc finger protein 566 Neighboring gene 6-pyruvoyl tetrahydrobiopterin synthase-like Neighboring gene uncharacterized LOC132342710

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 260
Names
zinc finger protein 529

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    46988079..47037921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024978713.2 → XP_024834481.1  zinc finger protein 260 isoform X1

    UniProtKB/TrEMBL
    F1MMM9
    Related
    ENSBTAP00000003306.7, ENSBTAT00000003306.7
    Conserved Domains (3) summary
    COG5048
    Location:357 → 501
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:417 → 437
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:5 → 46
    KRAB; KRAB box

  2. XM_024978715.2 → XP_024834483.1  zinc finger protein 260 isoform X1

    UniProtKB/TrEMBL
    F1MMM9
    Related
    ENSBTAP00000074604.1, ENSBTAT00000124147.1
    Conserved Domains (3) summary
    COG5048
    Location:357 → 501
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:417 → 437
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:5 → 46
    KRAB; KRAB box

  3. XM_024978724.2 → XP_024834492.1  zinc finger protein 260 isoform X2

    UniProtKB/TrEMBL
    A0AAA9SUN8
    Related
    ENSBTAP00000089064.1, ENSBTAT00000090861.1
Nucleotide Protein Strain
Heading Accession and Version

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