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LOC112482048 zinc finger protein with KRAB and SCAN domains 7-like [ Pteropus alecto (black flying fox) ]

Gene ID: 112482048, updated on 30-Mar-2024

Summary

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Gene symbol
LOC112482048
Gene description
zinc finger protein with KRAB and SCAN domains 7-like
Locus tag
PAL_GLEAN10007796
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus alecto
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
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Genomic context

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See LOC112482048 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current ASM32557v1 (GCF_000325575.1) Unplaced Scaffold NW_006437746.1 (3240921..3253390)

NW_006437746.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 445 Neighboring gene proteasome subunit beta type-2 pseudogene Neighboring gene zinc finger protein with KRAB and SCAN domains 7 Neighboring gene zinc finger protein 35 Neighboring gene zinc finger protein 660

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006437746 Unplaced Scaffold Reference ASM32557v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein with KRAB and SCAN domains 7-like
Names
Zinc finger protein 167

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus alecto Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM32557v1 Primary Assembly

Genomic

  1. NW_006437746.1 Reference ASM32557v1 Primary Assembly

    Range
    3240921..3253390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025048941.1 → XP_024904709.1  zinc finger protein with KRAB and SCAN domains 7-like

    UniProtKB/TrEMBL
    L5KH84
    Conserved Domains (4) summary
    smart00431
    Location:51 → 161
    SCAN; leucine rich region
    cd07765
    Location:232 → 270
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    COG5048
    Location:364 → 736
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:635 → 655
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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