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sugt1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [ Astatotilapia calliptera (eastern happy) ]

Gene ID: 113010140, updated on 15-Mar-2024

Summary

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Gene symbol
sugt1
Gene description
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone
See related
Ensembl:ENSACLG00000016768
Gene type
protein coding
RefSeq status
MODEL
Organism
Astatotilapia calliptera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Astatotilapia
Orthologs
human zebrafish all
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Genomic context

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See sugt1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
100 current fAstCal1.2 (GCF_900246225.1) 18 NC_039319.1 (26829293..26852620)

Chromosome 18 - NC_039319.1Genomic Context describing neighboring genes Neighboring gene endothelin receptor Ba Neighboring gene ETS-related transcription factor Elf-1-like Neighboring gene chondromodulin Neighboring gene protocadherin 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039319.1 Chromosome 18 Reference fAstCal1.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-folding chaperone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SGT1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astatotilapia calliptera Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAstCal1.2 Primary Assembly

Genomic

  1. NC_039319.1 Reference fAstCal1.2 Primary Assembly

    Range
    26829293..26852620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026149028.1 → XP_026004813.1  protein SGT1 homolog isoform X1

    UniProtKB/TrEMBL
    A0A3P8Q6W3
    Conserved Domains (2) summary
    sd00006
    Location:33 → 63
    TPR; TPR repeat [structural motif]
    cl26005
    Location:4 → 324
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional

  2. XM_026149030.1 → XP_026004815.1  protein SGT1 homolog isoform X3

    UniProtKB/TrEMBL
    A0A3P8Q6W3
    Conserved Domains (2) summary
    sd00006
    Location:32 → 62
    TPR; TPR repeat [structural motif]
    cl26005
    Location:9 → 323
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional

  3. XM_026149029.1 → XP_026004814.1  protein SGT1 homolog isoform X2

    UniProtKB/TrEMBL
    A0A3P8Q5D6, A0A3P8Q6W3
    Related
    ENSACLP00000024626.1, ENSACLT00000025218.1
    Conserved Domains (2) summary
    PLN03088
    Location:4 → 323
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:33 → 63
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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