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esr1 estrogen receptor 1 [ Carassius auratus (goldfish) ]

Gene ID: 113120951, updated on 15-Mar-2024

Summary

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Gene symbol
esr1
Gene description
estrogen receptor 1
See related
Ensembl:ENSCARG00000031177
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 20
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM336829v1 (GCF_003368295.1) 20 NC_039262.1 (12138196..12153236)

Chromosome 20 - NC_039262.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 2b Neighboring gene acidic residue methyltransferase 1 Neighboring gene spectrin repeat containing, nuclear envelope 1a Neighboring gene myc target 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039262.1 Chromosome 20 Reference ASM336829v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular cloning of estrogen receptor alpha and expression pattern of estrogen receptor subtypes in male and female goldfish. Choi CY, et al. Mol Cell Endocrinol, 2003 Jun 30. PMID 12850291
  2. Molecular characterization of five steroid receptors from pengze crucian carp and their expression profiles of juveniles in response to 17α-ethinylestradiol and 17α-methyltestosterone. Zheng Y, et al. Gen Comp Endocrinol, 2013 Sep 15. PMID 23806426

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear estrogen receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables steroid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in steroid hormone mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
estrogen receptor
Names
estrogen receptor alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carassius auratus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM336829v1 Primary Assembly

Genomic

  1. NC_039262.1 Reference ASM336829v1 Primary Assembly

    Range
    12138196..12153236
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026291107.1 → XP_026146892.1  estrogen receptor isoform X1

    UniProtKB/TrEMBL
    A0A6P6RN94, Q90WV1
    Related
    ENSCARP00000069321.1, ENSCART00000073825.1

  2. XM_026291108.1 → XP_026146893.1  estrogen receptor isoform X2

    UniProtKB/TrEMBL
    A0A6P6RPD9, Q90WV1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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