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LOC113240681 ataxin-2 homolog [ Hyposmocoma kahamanoa ]

Gene ID: 113240681, updated on 23-Oct-2023

Summary

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Gene symbol
LOC113240681
Gene description
ataxin-2 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Hyposmocoma kahamanoa
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Gelechioidea; Cosmopterigidae; Cosmopteriginae; Hyposmocoma
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Genomic context

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See LOC113240681 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current ASM358959v1 (GCF_003589595.1) Unplaced Scaffold NW_020653575.1 (6249062..6325674)

NW_020653575.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113225403 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class S Neighboring gene retinol dehydrogenase 14-like Neighboring gene vacuolar protein sorting 45 Neighboring gene malate dehydrogenase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020653575 Unplaced Scaffold Reference ASM358959v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-2 homolog; ataxin-2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hyposmocoma kahamanoa Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM358959v1

Genomic

  1. NW_020653575.1 Reference ASM358959v1

    Range
    6249062..6325674
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026478050.1 → XP_026333835.1  ataxin-2 homolog isoform X1

    Conserved Domains (2) summary
    pfam14438
    Location:30 → 101
    SM-ATX; Ataxin 2 SM domain
    cl26950
    Location:112 → 282
    LsmAD; LsmAD domain

  2. XM_026478051.1 → XP_026333836.1  ataxin-2-like protein isoform X2

  3. XM_026478053.1 → XP_026333838.1  ataxin-2-like protein isoform X4

    Conserved Domains (2) summary
    pfam14438
    Location:30 → 101
    SM-ATX; Ataxin 2 SM domain
    cl26950
    Location:112 → 282
    LsmAD; LsmAD domain

  4. XM_026478061.1 → XP_026333846.1  ataxin-2 homolog isoform X11

    Conserved Domains (3) summary
    pfam14438
    Location:30 → 101
    SM-ATX; Ataxin 2 SM domain
    cl26950
    Location:112 → 282
    LsmAD; LsmAD domain
    cl27330
    Location:508 → 586
    FlhF; Flagellar biosynthesis GTPase FlhF [Cell motility]

  5. XM_026478052.1 → XP_026333837.1  ataxin-2-like protein isoform X3

    Conserved Domains (2) summary
    pfam14438
    Location:30 → 101
    SM-ATX; Ataxin 2 SM domain
    cl26950
    Location:112 → 277
    LsmAD; LsmAD domain

  6. XM_026478054.1 → XP_026333839.1  ataxin-2 homolog isoform X5

    Conserved Domains (2) summary
    pfam14438
    Location:30 → 101
    SM-ATX; Ataxin 2 SM domain
    cl26950
    Location:112 → 282
    LsmAD; LsmAD domain

  7. XM_026478058.1 → XP_026333843.1  ataxin-2 homolog isoform X9

    Conserved Domains (2) summary
    pfam14438
    Location:30 → 101
    SM-ATX; Ataxin 2 SM domain
    cl26950
    Location:112 → 282
    LsmAD; LsmAD domain

  8. XM_026478056.1 → XP_026333841.1  ataxin-2 homolog isoform X7

    Conserved Domains (2) summary
    pfam14438
    Location:30 → 101
    SM-ATX; Ataxin 2 SM domain
    cl26950
    Location:112 → 282
    LsmAD; LsmAD domain

  9. XM_026478060.1 → XP_026333845.1  ataxin-2 homolog isoform X10

    Conserved Domains (2) summary
    pfam14438
    Location:30 → 101
    SM-ATX; Ataxin 2 SM domain
    cl26950
    Location:112 → 282
    LsmAD; LsmAD domain

  10. XM_026478057.1 → XP_026333842.1  ataxin-2 homolog isoform X8

    Conserved Domains (2) summary
    pfam14438
    Location:30 → 101
    SM-ATX; Ataxin 2 SM domain
    cl26950
    Location:112 → 282
    LsmAD; LsmAD domain

  11. XM_026478055.1 → XP_026333840.1  ataxin-2 homolog isoform X6

    Conserved Domains (2) summary
    pfam14438
    Location:30 → 101
    SM-ATX; Ataxin 2 SM domain
    cl26950
    Location:112 → 282
    LsmAD; LsmAD domain
Nucleotide Protein
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