U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC113362815 probable serine/threonine-protein kinase At1g54610 [ Papaver somniferum (opium poppy) ]

Gene ID: 113362815, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC113362815
Gene description
probable serine/threonine-protein kinase At1g54610
Locus tag
C5167_006755
Gene type
protein coding
RefSeq status
MODEL
Organism
Papaver somniferum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Ranunculales; Papaveraceae; Papaveroideae; Papaver
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC113362815 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM357369v1 (GCF_003573695.1) 4 NC_039361.1 (139300029..139304178)

Chromosome 4 - NC_039361.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113273196 Neighboring gene ubiquitin-conjugating enzyme E2 27-like Neighboring gene pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like Neighboring gene uncharacterized LOC113362817

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_039361.1 Chromosome 4 Reference ASM357369v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II CTD heptapeptide repeat kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cyclin-dependent protein kinase holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable serine/threonine-protein kinase At1g54610

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Papaver somniferum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM357369v1 Primary Assembly

Genomic

  1. NC_039361.1 Reference ASM357369v1 Primary Assembly

    Range
    139300029..139304178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026605310.1 → XP_026461095.1  probable serine/threonine-protein kinase At1g54610

    UniProtKB/TrEMBL
    A0A4Y7JG00
    Conserved Domains (1) summary
    cd07840
    Location:116 → 400
    STKc_CDK9_like; Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases