U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

nonC serine/threonine-protein kinase Smg1 [ Trichoplusia ni (cabbage looper) ]

Gene ID: 113498229, updated on 24-May-2024

Summary

Go to the top of the page Help
Gene symbol
nonC
Gene description
serine/threonine-protein kinase Smg1
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichoplusia ni
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See nonC in Genome Data Viewer
Location:
chromosome: 10
Exon count:
16
Annotation release Status Assembly Chr Location
100 current tn1 (GCF_003590095.1) 10 NC_039487.1 (12492270..12599969, complement)

Chromosome 10 - NC_039487.1Genomic Context describing neighboring genes Neighboring gene uncharacterized Golgi apparatus membrane protein-like protein CG5021 Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene TATA element modulatory factor Neighboring gene muscarinic Acetylcholine Receptor, C-type Neighboring gene ribosomal RNA-processing protein 7 homolog A Neighboring gene uncharacterized protein C7orf26 homolog Neighboring gene cleavage and polyadenylation specificity factor subunit 4

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_039487.1 Chromosome 10 Reference tn1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in TOR signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TORC1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of TORC2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
serine/threonine-protein kinase SMG1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Trichoplusia ni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference tn1

Genomic

  1. NC_039487.1 Reference tn1

    Range
    12492270..12599969 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026878167.1 → XP_026733968.1  serine/threonine-protein kinase SMG1

    UniProtKB/TrEMBL
    A0A7E5W023
    Conserved Domains (4) summary
    cd05170
    Location:1991 → 2288
    PIKKc_SMG1; Catalytic domain of Suppressor of Morphogenetic effect on Genitalia-1
    pfam02260
    Location:3345 → 3371
    FATC; FATC domain
    pfam15785
    Location:603 → 1187
    SMG1; Serine/threonine-protein kinase smg-1
    cl26386
    Location:2616 → 2716
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases