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Tmf TATA element modulatory factor [ Trichoplusia ni (cabbage looper) ]

Gene ID: 113498367, updated on 24-May-2024

Summary

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Gene symbol
Tmf
Gene description
TATA element modulatory factor
See related
EnsemblRapid:ENSNTCG00000011002
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichoplusia ni
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia
Orthologs
fruit fly all
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Genomic context

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See Tmf in Genome Data Viewer
Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
100 current tn1 (GCF_003590095.1) 10 NC_039487.1 (12480451..12490017)

Chromosome 10 - NC_039487.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113498269 Neighboring gene uncharacterized Golgi apparatus membrane protein-like protein CG5021 Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene serine/threonine-protein kinase Smg1 Neighboring gene muscarinic Acetylcholine Receptor, C-type Neighboring gene ribosomal RNA-processing protein 7 homolog A Neighboring gene uncharacterized protein C7orf26 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039487.1 Chromosome 10 Reference tn1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome responses of the host Trichoplusia ni to infection by the baculovirus Autographa californica multiple nucleopolyhedrovirus. Chen YR, et al. J Virol, 2014 Dec. PMID 25231311, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA element modulatory factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trichoplusia ni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference tn1

Genomic

  1. NC_039487.1 Reference tn1

    Range
    12480451..12490017
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026878379.1 → XP_026734180.1  TATA element modulatory factor

    UniProtKB/TrEMBL
    A0A7E5W0R4
    Related
    ENSNTCP00000014030.1, ENSNTCT00000017468.1
    Conserved Domains (3) summary
    pfam12325
    Location:1062 → 1144
    TMF_TATA_bd; TATA element modulatory factor 1 TATA binding
    pfam12329
    Location:661 → 734
    TMF_DNA_bd; TATA element modulatory factor 1 DNA binding
    cl25732
    Location:548 → 879
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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