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Tet Ten-Eleven Translocation (TET) family protein [ Trichoplusia ni (cabbage looper) ]

Gene ID: 113502725, updated on 18-Sep-2024

Summary

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Gene symbol
Tet
Gene description
Ten-Eleven Translocation (TET) family protein
See related
EnsemblRapid:ENSNTCG00000004992
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichoplusia ni
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia
Orthologs
fruit fly all
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Genomic context

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See Tet in Genome Data Viewer
Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
100 current tn1 (GCF_003590095.1) 17 NC_039494.1 (4521179..4559875)

Chromosome 17 - NC_039494.1Genomic Context describing neighboring genes Neighboring gene protein spaetzle 5 Neighboring gene DNA N6-methyl adenine demethylase-like Neighboring gene glutamate synthase [NADH], amyloplastic Neighboring gene Decaprenyl diphosphate synthase subunit 2 Neighboring gene vitamin K-dependent gamma-carboxylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039494.1 Chromosome 17 Reference tn1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5-methylcytosine dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oxidative demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA N6-methyl adenine demethylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trichoplusia ni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference tn1

Genomic

  1. NC_039494.1 Reference tn1

    Range
    4521179..4559875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026884381.1 → XP_026740182.1  DNA N6-methyl adenine demethylase isoform X1

    UniProtKB/TrEMBL
    A0A7E5WIL9
    Conserved Domains (3) summary
    pfam12851
    Location:992 → 1114
    Tet_JBP; Oxygenase domain of the 2OGFeDO superfamily
    cl25496
    Location:1188 → 1543
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl26809
    Location:21 → 182
    Sec23_BS; Sec23/Sec24 beta-sandwich domain

  2. XM_026884382.1 → XP_026740183.1  DNA N6-methyl adenine demethylase isoform X2

    UniProtKB/TrEMBL
    A0A7E5WHI1
    Related
    ENSNTCP00000006384.1, ENSNTCT00000007860.1
Nucleotide Protein
Heading Accession and Version

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