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LOC113502728 transcriptional repressor protein YY1-like [ Trichoplusia ni (cabbage looper) ]

Gene ID: 113502728, updated on 21-Dec-2023

Summary

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Gene symbol
LOC113502728
Gene description
transcriptional repressor protein YY1-like
See related
EnsemblRapid:ENSNTCG00000005134
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichoplusia ni
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia
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Genomic context

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See LOC113502728 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
100 current tn1 (GCF_003590095.1) 17 NC_039494.1 (9228764..9245184, complement)

Chromosome 17 - NC_039494.1Genomic Context describing neighboring genes Neighboring gene ABC transporter G family member 7-like Neighboring gene coatomer subunit gamma-like Neighboring gene isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like Neighboring gene CUE domain-containing protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039494.1 Chromosome 17 Reference tn1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PcG protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcriptional repressor protein YY1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trichoplusia ni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference tn1

Genomic

  1. NC_039494.1 Reference tn1

    Range
    9228764..9245184 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026884388.1 → XP_026740189.1  transcriptional repressor protein YY1-like isoform X3

    UniProtKB/TrEMBL
    A0A7E5WHN3
    Conserved Domains (2) summary
    COG5048
    Location:250 → 361
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:252 → 272
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_026884387.1 → XP_026740188.1  transcriptional repressor protein YY1-like isoform X2

    UniProtKB/TrEMBL
    A0A7E5WHK6
    Conserved Domains (2) summary
    COG5048
    Location:258 → 369
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:260 → 280
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_026884386.1 → XP_026740187.1  transcriptional repressor protein YY1-like isoform X1

    UniProtKB/TrEMBL
    A0A7E5WIN2
    Related
    ENSNTCP00000006544.1, ENSNTCT00000008071.1
Nucleotide Protein
Heading Accession and Version

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