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su(f) cleavage stimulation factor subunit su(f) [ Trichoplusia ni (cabbage looper) ]

Gene ID: 113502731, updated on 16-May-2024

Summary

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Gene symbol
su(f)
Gene description
cleavage stimulation factor subunit su(f)
See related
EnsemblRapid:ENSNTCG00000008385
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichoplusia ni
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia
Orthologs
fruit fly all
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Genomic context

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See su(f) in Genome Data Viewer
Location:
chromosome: 17
Exon count:
18
Annotation release Status Assembly Chr Location
100 current tn1 (GCF_003590095.1) 17 NC_039494.1 (8111251..8124406, complement)

Chromosome 17 - NC_039494.1Genomic Context describing neighboring genes Neighboring gene Ribosomal RNA processing protein 1 homolog Nnp-1 Neighboring gene NADH dehydrogenase (ubiquinone) 49 kDa subunit Neighboring gene U6 snRNA-associated Sm-like protein LSm2 Neighboring gene ankyrin repeat domain-containing protein 50 Neighboring gene transfer RNA leucine (anticodon UAG)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039494.1 Chromosome 17 Reference tn1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein suppressor of forked

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trichoplusia ni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference tn1

Genomic

  1. NC_039494.1 Reference tn1

    Range
    8111251..8124406 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026884391.1 → XP_026740192.1  protein suppressor of forked

    UniProtKB/TrEMBL
    A0A7E5WIN8
    Related
    ENSNTCP00000010686.1, ENSNTCT00000013262.1
    Conserved Domains (2) summary
    pfam05843
    Location:374 → 655
    Suf; Suppressor of forked protein (Suf)
    cl26993
    Location:17 → 506
    Suf; Suppressor of forked protein (Suf)
Nucleotide Protein
Heading Accession and Version

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