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LOC113509056 dynein light chain 1, axonemal-like [ Trichoplusia ni (cabbage looper) ]

Gene ID: 113509056, updated on 21-Dec-2023

Summary

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Gene symbol
LOC113509056
Gene description
dynein light chain 1, axonemal-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichoplusia ni
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia
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Genomic context

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See LOC113509056 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
100 current tn1 (GCF_003590095.1) 3 NC_039480.1 (5921557..5924256, complement)

Chromosome 3 - NC_039480.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113509061 Neighboring gene E3 ubiquitin-protein ligase RNF220-like Neighboring gene zinc finger protein 184-like Neighboring gene uncharacterized LOC113509062 Neighboring gene copper chaperone for superoxide dismutase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039480.1 Chromosome 3 Reference tn1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome responses of the host Trichoplusia ni to infection by the baculovirus Autographa californica multiple nucleopolyhedrovirus. Chen YR, et al. J Virol, 2014 Dec. PMID 25231311, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dynein light chain 1, axonemal-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trichoplusia ni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference tn1

Genomic

  1. NC_039480.1 Reference tn1

    Range
    5921557..5924256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026892328.1 → XP_026748129.1  dynein light chain 1, axonemal-like

    UniProtKB/TrEMBL
    A0A7E5X5R1
    Conserved Domains (3) summary
    sd00031
    Location:50 → 71
    LRR_1; leucine-rich repeat [structural motif]
    sd00035
    Location:142 → 171
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam14580
    Location:37 → 176
    LRR_9; Leucine-rich repeat
Nucleotide Protein
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Gene LinkOut

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