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LOC113509060 calmodulin-like protein 4 [ Trichoplusia ni (cabbage looper) ]

Gene ID: 113509060, updated on 21-Dec-2023

Summary

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Gene symbol
LOC113509060
Gene description
calmodulin-like protein 4
See related
EnsemblRapid:ENSNTCG00000008681
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichoplusia ni
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Noctuoidea; Noctuidae; Plusiinae; Trichoplusia
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Genomic context

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See LOC113509060 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
100 current tn1 (GCF_003590095.1) 3 NC_039480.1 (5901332..5904081, complement)

Chromosome 3 - NC_039480.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113509058 Neighboring gene uncharacterized LOC113508681 Neighboring gene uncharacterized LOC113509057 Neighboring gene uncharacterized LOC113509061 Neighboring gene E3 ubiquitin-protein ligase RNF220-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_039480.1 Chromosome 3 Reference tn1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome responses of the host Trichoplusia ni to infection by the baculovirus Autographa californica multiple nucleopolyhedrovirus. Chen YR, et al. J Virol, 2014 Dec. PMID 25231311, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of myosin II complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmodulin-like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trichoplusia ni Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference tn1

Genomic

  1. NC_039480.1 Reference tn1

    Range
    5901332..5904081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026892334.1 → XP_026748135.1  calmodulin-like protein 4

    UniProtKB/TrEMBL
    A0A7E5X4I9
    Related
    ENSNTCP00000011048.1, ENSNTCT00000013711.1
    Conserved Domains (1) summary
    cl25352
    Location:1 → 143
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
Heading Accession and Version

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