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sod1 superoxide dismutase 1, soluble [ Tachysurus fulvidraco (yellow catfish) ]

Gene ID: 113659213, updated on 10-Apr-2024

Summary

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Gene symbol
sod1
Gene description
superoxide dismutase 1, soluble
See related
EnsemblRapid:ENSTFUG00005014015
Gene type
protein coding
RefSeq status
MODEL
Organism
Tachysurus fulvidraco
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Bagridae; Tachysurus
Also known as
SOD
Orthologs
human zebrafish all
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Genomic context

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See sod1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
101 current HZAU_PFXX_2.0 (GCF_022655615.1) 20 NC_062537.1 (8915038..8919526)
100 previous assembly ASM372403v1 (GCF_003724035.1) Unplaced Scaffold NW_020848034.1 (392364..396866, complement)

Chromosome 20 - NC_062537.1Genomic Context describing neighboring genes Neighboring gene periostin, osteoblast specific factor a Neighboring gene SR-related CTD-associated factor 4a Neighboring gene TIAM Rac1 associated GEF 1a Neighboring gene glutamate receptor, ionotropic, kainate 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in removal of superoxide radicals IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
superoxide dismutase [Cu-Zn]
Names
copper/zinc superoxide dismutase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tachysurus fulvidraco Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZAU_PFXX_2.0

Genomic

  1. NC_062537.1 Reference HZAU_PFXX_2.0

    Range
    8915038..8919526
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027171881.2 → XP_027027682.1  superoxide dismutase [Cu-Zn]

    Related
    ENSTFUP00005032164.1, ENSTFUT00005037689.1
Nucleotide Protein
Heading Accession and Version

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