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LOC11441860 ISWI chromatin-remodeling complex ATPase CHR11 [ Medicago truncatula (barrel medic) ]

Gene ID: 11441860, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11441860
Gene description
ISWI chromatin-remodeling complex ATPase CHR11
Locus tag
MtrunA17_Chr2g0286291
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11441860 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
25
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 2 NC_053043.1 (6684149..6692991, complement)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 2 NC_016408.2 (6610965..6619795, complement)

Chromosome 2 - NC_053043.1Genomic Context describing neighboring genes Neighboring gene monothiol glutaredoxin-S10 Neighboring gene serine/threonine-protein kinase PBL27 Neighboring gene lipase Neighboring gene caldesmon

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ISWI chromatin-remodeling complex ATPase CHR11
Names
putative calcium/calmodulin-dependent protein kinase chromatin remodeling ISWI family

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053043.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    6684149..6692991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039830305.1 → XP_039686239.1  ISWI chromatin-remodeling complex ATPase CHR11 isoform X2

    UniProtKB/TrEMBL
    A0A072UR06
    Conserved Domains (1) summary
    PLN03142
    Location:40 → 1050
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  2. XM_003593931.4 → XP_003593979.1  ISWI chromatin-remodeling complex ATPase CHR11 isoform X1

    See identical proteins and their annotated locations for XP_003593979.1

    UniProtKB/TrEMBL
    A0A072UR06, G7ISH3
    Conserved Domains (1) summary
    PLN03142
    Location:40 → 1051
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
Nucleotide Protein
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