Format

Send to:

Choose Destination

camta2 calmodulin binding transcription activator 2 [ Perca flavescens (yellow perch) ]

Gene ID: 114574076, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
camta2
Gene description
calmodulin binding transcription activator 2
Locus tag
EPR50_G00193030
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca flavescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See camta2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
13
Annotation release Status Assembly Chr Location
100 current PFLA_1.0 (GCF_004354835.1) 19 NC_041349.1 (1981601..2003540)

Chromosome 19 - NC_041349.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 721-like Neighboring gene RNA polymerase-associated protein RTF1 homolog Neighboring gene uncharacterized LOC114545283 Neighboring gene calmodulin-binding transcription activator 2-like Neighboring gene natriuretic peptide C-like 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_041349.1 Chromosome 19 Reference PFLA_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
calmodulin-binding transcription activator 2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Perca flavescens Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PFLA_1.0 Primary Assembly

Genomic

  1. NC_041349.1 Reference PFLA_1.0 Primary Assembly

    Range
    1981601..2003540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028606384.1 → XP_028462185.1  calmodulin-binding transcription activator 2-like isoform X1

    Conserved Domains (1) summary
    smart01076
    Location:35 → 151
    CG-1; CG-1 domains are highly conserved domains of about 130 amino-acid residues

  2. XM_028606389.1 → XP_028462190.1  calmodulin-binding transcription activator 2-like isoform X2

    Conserved Domains (1) summary
    smart01076
    Location:35 → 151
    CG-1; CG-1 domains are highly conserved domains of about 130 amino-acid residues

  3. XM_028606388.1 → XP_028462189.1  calmodulin-binding transcription activator 2-like isoform X1

    Conserved Domains (1) summary
    smart01076
    Location:35 → 151
    CG-1; CG-1 domains are highly conserved domains of about 130 amino-acid residues

  4. XM_028606385.1 → XP_028462186.1  calmodulin-binding transcription activator 2-like isoform X1

    Conserved Domains (1) summary
    smart01076
    Location:35 → 151
    CG-1; CG-1 domains are highly conserved domains of about 130 amino-acid residues

  5. XM_028606387.1 → XP_028462188.1  calmodulin-binding transcription activator 2-like isoform X1

    Conserved Domains (1) summary
    smart01076
    Location:35 → 151
    CG-1; CG-1 domains are highly conserved domains of about 130 amino-acid residues

  6. XM_028606386.1 → XP_028462187.1  calmodulin-binding transcription activator 2-like isoform X1

    Conserved Domains (1) summary
    smart01076
    Location:35 → 151
    CG-1; CG-1 domains are highly conserved domains of about 130 amino-acid residues
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.